PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002603G0280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 417aa    MW: 46506.4 Da    PI: 4.7776
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002603G0280genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-1269126155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  + n  ++ k+ + g ++++e Aa+a++ a++k++g
  PH01002603G0280  69 SIYRGVTRHRWTGRFEAHLWDkNCFNSlHNkKKGRQGAYDSEEAAARAYDLAALKYWG 126
                      57*******************333366944577777********************98 PP

2AP254.82.4e-17169221156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAaka++ a+ +++g+
  PH01002603G0280 169 SRYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 221
                      79****99**********988422...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-1669135IPR016177DNA-binding domain
PfamPF008475.3E-1069126IPR001471AP2/ERF domain
PROSITE profilePS5103219.24370134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1370134IPR001471AP2/ERF domain
SMARTSM003802.2E-2370140IPR001471AP2/ERF domain
PRINTSPR003672.6E-67182IPR001471AP2/ERF domain
PfamPF008476.4E-13169220IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-18169230IPR016177DNA-binding domain
CDDcd000181.53E-25169230No hitNo description
PROSITE profilePS5103219.019170228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-19170228IPR001471AP2/ERF domain
SMARTSM003802.3E-26170234IPR001471AP2/ERF domain
PRINTSPR003672.6E-6210230IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MKRSLPPPPP LCSLPSPSSS PSNSSSISIP CKRARTQKST KAKAKRPKKD TSQQSKEPDS  60
SNGSGKRSSI YRGVTRHRWT GRFEAHLWDK NCFNSLHNKK KGRQGAYDSE EAAARAYDLA  120
ALKYWGPETI LNFPLDDYEK QRPEMEGVSR EEYLASLRRR SSGFSRGLSR YRGVARHHHN  180
GRWEARIGRV LGNKYLYLGT FDTQEEAAKA YDLAAIEYRG ANAVTNFDMS CYLDQPQLLG  240
QPHQEPQVVP ALQEEPQHDQ SDNVVQELNF SEAKTPDDIN EPLAVDDSIE DISEPLAVDD  300
SIEDINKPLA VHDIIEESLW SPCMDYELDS MTGANISNSM NLSEWFNDAA FEVEGNIECL  360
FEGCSAVDEG SNDGAGLAEL SLFEEDDKLK DFSEREEGIT QAKNVSCPPK MISVCN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2476261e-157AB247626.1 Oryza sativa Japonica Group OsANTL mRNA for aintegumenta-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662699.11e-178PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6X5Y62e-92WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLJ3N5Q21e-178J3N5Q2_ORYBR; Uncharacterized protein
STRINGOB11G11380.11e-178(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-67AP2 family protein